PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G246000.1.p
Common NameGLYMA_03G246000, LOC100795995
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 624aa    MW: 70685.4 Da    PI: 6.7938
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G246000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.8e-15114177270
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                          Wt++evlaL ++r++me+++ +       W++vs+k++e gf++s+++Ckek+e+ ++++ +i+++ +k
  Glyma.03G246000.1.p 114 WTNDEVLALFRIRSSMENWFPEL-----TWDHVSRKLAEVGFKKSAEKCKEKFEDESRYFDNINNNYGK 177
                          ********************987.....9********************************99987666 PP

2trihelix92.44.7e-29473566185
             trihelix   1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rW+++evlaLi++r          + +++ ++g+ k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpy
  Glyma.03G246000.1.p 473 RWPRDEVLALINLRCtslsssnnnNNNNEEKEGNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPY 562
                          8*************95555554444444444567******************************************************** PP

             trihelix  82 fdql 85 
                          f+ql
  Glyma.03G246000.1.p 563 FHQL 566
                          ***9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.028106165IPR017877Myb-like domain
PfamPF138374.2E-10112177No hitNo description
CDDcd122033.41E-22472546No hitNo description
PfamPF138371.8E-19472566No hitNo description
PROSITE profilePS500906.017473539IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MFDGAPDQFH QFIAPTRTTL PLHMSFPLHH HASSTPPPNT FLPFDPYNPS SHHHHLPSLQ  60
TNHLLHPLHP PTTIISPTPT HKHEQDKVAP INNNNDVEIQ RDQRQLPDQL TDSWTNDEVL  120
ALFRIRSSME NWFPELTWDH VSRKLAEVGF KKSAEKCKEK FEDESRYFDN INNNYGKNNF  180
RFLISELEEL CQNPDPGGGG DNHNGVEKTH PLGGDNMGHH ALEENKRDIE ITTATKQCDD  240
IVVEKSNISK VRKRKRRDRF EMFKGFCESV VNKMMAQQEE IHNRLLEDML KRDQEKFARE  300
EAWKKQELDR MNKELEIMAQ EQAIAGGRHA TIIEFLKKCA TTTTSLSSPP SQNAKYYKTN  360
GSNLPNCALH PQNPNDPSNE DNNLEPTPSP KMIQNHDQAT LLGAENPSAS DTLLQVPSSS  420
NSSPTPGHNP SSSLNSHNNI IPLDSNSVST YKPTSTTPMA STSENSKDDI GRRWPRDEVL  480
ALINLRCTSL SSSNNNNNNN EEKEGNNKGP LWERISQGMS ELGYKRSAKR CKEKWENINK  540
YFRKTKDNVN KKRSLNSRTC PYFHQLSCLY GQGKIVPQSD EREGKNYLNP TANSGDQVPP  600
DHDQVQADES YQVGSAALVQ YAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-168AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577279.10.0PREDICTED: trihelix transcription factor GTL1-like
RefseqXP_006577280.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLK7KGV20.0K7KGV2_SOYBN; Uncharacterized protein
STRINGGLYMA03G40611.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-66Trihelix family protein